Population Genetic Structure of the So-Iny Mullet (Planiliza haematocheilus) along the Coast of Thailand

Main Article Content

Verakiat Supmee
Pradit Sangthong
Jamjun Pechsiri
Juthamas Suppapan

Abstract

The so-iny mullet (Planiliza haematocheilus) is a coastal marine fish harvested commercially in Thailand. Over the past ten years, the volume of so-iny mullet catches has decreased. As a result, genetic information is required to create an effective sustainable management plan. Our study examined the genetic structure of the so-iny mullet population along the coast of Thailand. One hundred sixty-four samples were caught from nine fishing sites along the Thai coast: southern Thailand (Nakhon Si Thammarat, Pattani, Satun, Krabi, and Phang Nga), western upper Gulf of Thailand (Samut Songkram and Petchburi), and eastern upper Gulf of Thailand (Trat and Rayong). Genetic variation was examined in the partial nucleotide sequence of the control region in mitochondrial DNA (mtDNA CR) (550–556 base pairs), and 44 haplotypes were found. Unique haplotypes were observed in all of the populations studied; in some populations there were several, implying that there is a large female effective population size. Population genetic structure analysis revealed differences among samples from southern Thailand, the western upper Gulf of Thailand, and the eastern upper Gulf of Thailand. In conclusion, we suggest that migration behavior as well as geographical distance between so-iny mullet habitats shaped the genetic structure of the populations in Thailand. Our findings can help guide so-iny mullet management in Thailand.

Article Details

How to Cite
Supmee, V., Sangthong, P. ., Pechsiri, J. ., & Suppapan, J. (2023). Population Genetic Structure of the So-Iny Mullet (Planiliza haematocheilus) along the Coast of Thailand. Journal of Fisheries and Environment, 47(1), 75–88. Retrieved from https://li01.tci-thaijo.org/index.php/JFE/article/view/257350
Section
Research Article

References

Ashfaq, M., P.D.N. Hebert, M.S. Mirza, A.M. Khan, S. Mansoor, G.S. Shah and Y. Zafar. 2014. DNA Barcoding of Bemisia tabaci complex (Hemiptera: Aleyrodidae) reveals southerly expansion of the dominant whitefly species on cotton in Pakistan. PLoS ONE 9(8): e104485. DOI: 10.1371/journal.pone.0104485.

Bronstein, O., A. Kroh and E. Haring. 2018. Mind the gap! The mitochondrial control region and its power as a phylogenetic marker in echinoids. BMC Evolutionary Biology

: 80. DOI: 10.1186/s12862-018-1198-x.

Chanthran, S.D.V., P.E. Lim, Y. Li, T.Y. Liao, S.W. Poong, J. Du, M.A.S. Hussein, A. Sade, R. Rumpet and K.H. Loh. 2020. Genetic diversity and population structure of Terapon jarbua (Forskål, 1775) (Teleostei, Terapontidae) in Malaysian waters. Zookeys 911: 139–160. DOI: 10.3897/zookeys.911.39222.

Chen, Y., J. Lusana, Z. Xu, J.T. James, Z. Lü and H. Deng. 2018. DNA barcoding reveals identity of Mugilids (Teleostei: Mugiliformes) from the East China Sea along the Coast of Zheiang, China. Pacific Science 72(4): 423–434. DOI:10.2984/72.4.3.

Cordero, D., J.B. Peña and C. Saavedra. 2014. Phylogeographic analysis of introns and mitochondrial DNA in the clam Ruditapes decussatus uncovers the effects of Pleistocene glaciations and endogenous barriers to gene flow. Molecular Phylogenetics and Evolution 71: 274–287. DOI: 10.1016/j.ympev.2013.11.003.

Excoffier, L. and H.E.L. Lischer. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analysis under Linux and Windows. Molecular Ecology Resources 10: 564–567. DOI: 10.1111/j.1755-0998.2010.02847.x.

Fishery Statistics Analysis and Research Group. 2011. Fisheries Statistics of Thailand 2009, No. 9/2011. Department of Fisheries, Ministry of Agriculture and Cooperatives, Bangkok, Thailand. 91 pp.

Fishery Statistics Analysis and Research Group. 2021. Fisheries Statistics of Thailand 2019, No. 5/2021. Department of Fisheries, Ministry of Agriculture and Cooperatives, Bangkok, Thailand. 83 pp.

Fourdrilis, S., M.A.M. de Frias and T. Backeljau. 2018. Relation between mitochondrial DNA hyperdiversity, mutation rate and mitochondrial genome evolution in Melarhaphe neritoides (Gastropoda: Littorinidae) and other Caenogastropoda. Scientific Reports 8: 17964. DOI: 10.1038/s41598-018-36428-7.

Fu, F.X. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915–925. DOI: 10.1093/genetics/147.2.915.

Johannesson, K., A.K. Ring, K.B. Johannesson, E. Renborg, P.R. Jonsson and J.N. Havenhand. 2018. Oceanographic barriers to gene flow promote genetic subdivision of the tunicate Ciona intestinalis in a North Sea archipelago. Marine Biology 165: 126. DOI: 10.1007/s00227-018-3388-x.

Khamnamtong, B., S, Prasertlux, S. Janpoom and S. Klinbunga 2021. Genetic differentiation of the blue swimming crab Portunus pelagicus along the coastal Thai waters revealed by SSCP analysis of cytochrome c oxidase subunit I. Genetics of Aquatic Organisms 5: 55–65. DOI: 10.4194/2459-1831-v5_2_02.

Korstian, J.M., A.M. Hale and D.A. Williams. 2015. Genetic diversity, historic population size, and population structure in 2 North American tree bats. Journal of Mammalogy 96(5): 972–980. DOI: 10.1093/jmammal/gyv101.

Korunes, K.L. and K. Samuk. 2021. PIXY: Unbiased estimation of nucleotide diversity and divergence in the presence of missing data. Molecular Ecology Resources 21(4): 1359–1368. DOI: 10.1111/1755-0998.13326.

Kunal, S.P., G. Kumar, M.R. Menezes and R.M. Meena. 2013. Mitochondrial DNA analysis reveals three stocks of yellowfin tuna Thunnus albacares (Bonnaterre, 1788) in Indian waters. Conservation Genetics 14(1): 205–213. DOI: 10.1007/s10592-013-0445-3.

Liu, J., C.L. Brown and T. Yang. 2009. Population genetic structure and historical demography of grey mullet, Mugil cephalus, along the coast of China, inferred by analysis of the mitochondrial control region. Biochemical Systematics and Ecology 37: 556–566. DOI: 10.1016/j.bse.2009.09.002.

Liu, S.Y.V., I.H. Huang, M.Y. Liu, H.D. Lin, F.Y. Wang and T.Y. Liao. 2015. Genetic stock structure of Terapon jarbua in Taiwanese waters. Marine and Coastal Fisheries 7: 464–473. DOI: 10.1080/19425120.2015.1074966.

Lu, Y.M., C.H. Shih, P.C. Chen, W.C. Kao, Y.C. Lee, Y.S. Han and T.D. Tzeng. 2022. Genetic variations and expansion of the blue swimmer crab (Portunus pelagicus) in Southeast Asia. Journal of Marine Science and Engineering 10: 1071. DOI: 10.3390/jmse10081071.

Marini, M., I.R. Pedrosa-Gerasmio, M.D. Santos, T. Shibuno, A. Daryani, M.R.R. Romana-Eguia and A. Wibowo. 2021. Genetic diversity, population structure and demographic history of the tropical eel Anguilla bicolor pacifica in Southeast Asia using mitochondrial DNA control region sequences. Global Ecology and Conservation 26: e01493. DOI: 10.1016/j.gecco.2021.e01493.

Orr, H.A. and R.L. Unckless. 2014. The Population genetics of evolutionary rescue. PLoS Genetics 10(8): e1004551. DOI: 10.1371/journal.pgen.1004551.

Panithanarak, T. 2017. Population genetic structure of marine organisms within the Gulf of Thailand. Burapha Science Journal 22(3): 481–499.

Pascual, M., B. Rives, C. Schunter and E. Macpherson. 2017. Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea. PLoS ONE 12(5): e0176419. DOI: 10.1371/journal.pone.0176419.

Ragionieri, L., S. Cannicci, C.D. Schubart and S. Fratini. 2010. Gene flow and demographic history of the mangrove crab Neosarmatium meinerti: A case study from the western Indian Ocean Estuarine, Coastal and Shelf Science 86: 179–188. DOI: 10.1016/j.ecss.2009.11.002.

Robalo, J., I. Farias, S.M. Francisco, K. Avellaneda, R. Castilho and I. Figueiredo. 2021. Genetic population structure of the Blackspot seabream (Pagellus bogaraveo): contribution of mtDNA control region to fisheries management. Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis 32(4): 115–119. DOI: 10.1080/24701394.2021.1882445.

Rozas, J., A. Ferrer-Mata, J.C. Sánchez-DelBarrio, S. Guirao-Rico, P. Librado, S.E. Ramos-Onsins and A. Sánchez-Gracia. 2017. DnaSP 6: DNA sequence polymorphism analysis of large datasets. Molecular Biology and Evolution 34: 3299–3302. DOI: 10.1093/molbev/msx248.

Salvarina, I., E. Koutrakis and I. Leonardos. 2018. Comparative study of feeding behavior of five Mugilidae species juveniles from two estuarine systems in the North Aegean Sea. Journal of the Marine Biological Association of the United Kingdom 98(2): 283–297. DOI: 10.1017/S0025315416001211.

Santana, F.M., E. Morize, M. Labonne, R. Lessa and J. Clavier. 2018. Connectivity between the marine coast and estuary for white mullet (Mugil curema) in northeastern Brazil revealed by otolith Sr:Ca ratio. Estuarine, Coastal and Shelf Science 215: 124–131. DOI: 10.1016/j.ecss.2018.09.032.

Saramul, S. 2017. Seasonal monsoon variations in surface currents in the Gulf of Thailand revealed by high frequency radar. Engineering Journal 21(4): 25-37. DOI: 10.4186/ej.2017.21.4.25.

Silva, I.C., N. Mesquita and J. Paula. 2010. Lack of population structure in the fiddler crab Uca annulipes along an East African latitudinal gradient: genetic and morphometric evidence. Marine Biology 157: 1113–1126. DOI: 10.1007/s00227-010-1393-9.

Sun, P., F. Yin, Q. Gao and Z. Shi. 2013. Genetic diversity and population structure of silver pomfret (Pampus argenteus) in the Indo-West Pacific revealed by mitochondrial control region sequences. Biochemical Systematics and Ecology 51: 28–36. DOI: 10.1016/j.bse.2013.08.005.

Sun, P., J. Yu, B. Tang and Z. Liu. 2021. Gene variation and population structure of Pampus chinensis in the China coast revealed by mitochondrial control region sequences. Mitochondrial DNA Part B: Resources 6(8): 2240–2245. DOI: 10.1080%2F23802359.2021.1878963.

Supmee, V., J. Suppapan, J. Pechsiri and P. Sangthong. 2017. Population genetic structure of greenback mullet (Liza subviridis) along the Andaman Sea coast of Thailand. Journal of Fisheries Technology Research 11(2): 98–112.

Supmee, V., A. Songrak, J. Suppapan and P. Sangthong. 2021. Population genetic structure of ornate threadfin bream (Nemipterus hexodon) in Thailand. Tropical Life Sciences Research 32(1): 63–82. DOI: 10.21315/tlsr2021.32.1.4.

Suppapan, J., J. Pechsiri, S. O-Thong, A. Vanichanon, P. Sangthong and V. Supmee. 2017. Population genetic analysis of oceanic paddle crab (Varuna litterata) in Thailand. Sains Malaysiana 46(12): 2251–2261. DOI: 10.17576/jsm-2017-4612-01.

Suppapan, J., P. Sangthong, A. Songrak and V. Supmee. 2021. Population genetic structure of hard clam (Meretrix lyrata) along the Southern coast of Thailand. Biodiversitas 22(5): 2486–2496. DOI: 10.13057/biodiv/d220505.

Tajima, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585–595. DOI: 10.1093/genetics/123.3.585.

Tamura, K., G. Stecher and S. Kumar. 2021. MEGA11: Molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution 38(7): 3022–3027. DOI: 10.1093/molbev/msab120.

Tan, M.P., H.M. Gan, M.M. Nabilsyafiq, A.G. Mazlan, T.N.A.M. Jaafar, M.N.S. Azizah, M. Danish-Daniel and Y.Y. Sung. 2020. Genetic diversity of the Pearse’s mudskipper Periophthalmus novemradiatus (Perciformes: Gobiidae) and characterization of its complete mitochondrial genome. Thalassas: An International Journal of Marine Sciences 36: 103–113. DOI: 10.1007/s41208-019-00189-5.

Tang, B.P., Y. Liu, Z.Z. Xin, D.Z. Zhang, Z.F. Wang, X.Y. Zhu, Y. Wang, H.B. Zhang, C.L. Zhou, X.Y. Chai and Q.N. Liu. 2018. Characterization of the complete mitochondrial genome of Helice wuana (Grapsoidea: Varunidae) and comparison with other Brachyuran crabs. Genomics 110: 231–230. DOI: 10.1016/j.ygeno.2017.10.001.

Theeranukul, P., S. Watabe, D. Ikeda, F. Maltagliati, J. Kettratad and S. Piyapattanakorn. 2021. Genetic diversity of blue-spotted mudskipper (Boleophthalmus boddarti) populations in Gulf of Thailand. Agriculture and Natural Resources 55: 838–847. DOI: 10.34044/j.anres.2021.55.5.14.

Thompson, J.D., D.G. Higgins and T.J. Gibson. 1994. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673–4680. DOI: 10.1093/nar/22.22.4673.

Ueda, S. and T. Itino. 2017. Population genetic analysis of a highland DNA clade in the red ant Myrmica kotokui Forel 1911 (Formicidae, Myrmicinae). Japanese Journal of Environmental Entomology and Zoology 28(1): 5–13. DOI: 10.11257/jjeez.28.5.

Untergasser, A., I. Cutcutache, T. Koressaar, J. Ye, B.C. Faircloth, M. Remm and S.G. Rozen. 2012. Primer 3 new capabilities and interfaces. Nucleic Acids Research 40(15): e115. DOI: 10.1093/nar/gks596.

Ward, R.D. 2000. Genetics in fisheries management. Hydrobiologia 420: 191–201. DOI: 10.1023/A:1003928327503.

Weersing, K. and R.J. Toonen. 2009. Population genetics, larval dispersal, and connectivity in marine systems. Marine Ecology Progress Series 393: 1–12. DOI: 10.3354/meps08287.

Wellmann, R. and J. Bennewitz. 2019. Key genetic parameters for population management. Frontiers in Genetics 10: 667. DOI: 10.3389%2Ffgene.2019.00667.

Wikimedia Commons contributors. 2021. File: Straits of Malacca.png. https://commons.wikimedia.org/w/index.php?title=File:Straits_of_Malacca.png&oldid=554771038. Cited 27 Dec 2022.

Wittayanon, C. 1993. Taxonomy of gray mullets (Pisces: Mugilidae) in Thai waters. Master’s Thesis, Chulalongkorn University, Bangkok, Thailand. 990 pp.

Yang, M., L. Gong, J. Sui and X. Li. 2019. The complete mitochondrial genome of Calyptogena marissinica (Heterodonta: Veneroida: Vesicomyidae): Insight into the deep-sea adaptive evolution of vesicomyids. PLoS ONE 14(9): e0217952. DOI: 10.1371/journal.pone.0217952.

Zarei, F. and H. Alipanah. 2014. Mitochondrial DNA variation, genetic structure and demographic history of Iranian populations. Molecular Biology Research Communications 3(1): 45–65. DOI: 10.22099/mbrc.2014.1954.

Zhao, N., H.B. Guo, L. Jia, Q.X. Deng, C.H. Zhu and B. Zhang. 2021. High-quality chromosome-level genome assembly of redlip mullet (Planiliza haematocheila). Zoological Research 42(6): 796–799. DOI: 10.24272/j.issn.2095-8137.2021.255.