Identification of Yanagi Mushroom (Cyclocybe spp.) Using Morphological Characteristics and ITS Region Sequences
Keywords:
identification, Yanagi mushroom, morphology, ITS region sequencesAbstract
The Yanagi mushroom (Cyclocybe spp.) is one of the important mushrooms widely cultivated. Species identification of this mushroom in Thailand was confused. The objective of this research was to investigate morphological characteristics and identify ITS region sequences of Yanagi mushroom strains for correct identification. Nineteen strains of Yanagi mushrooms were collected from 10 different locations for the study. The results revealed that 18 strains showed brown or light brown to cream on the cap, cylindrical stalk, and off-white surface. After the cap was open, the partial veil was quite short seeming like C. cylindracea. While the Yanagi mushroom strain Ya11 was different, the cap color was brown to dark brown with tiny white scales, the stalk was cylindrical, the surface was light brown, and the partial veil was thicker and larger, seeming like
C. chaxingu. Furthermore, the nucleotide sequence analysis of the ITS region and phylogenetic analysis separated 19 Yanagi mushroom strains into two groups according to the morphological study. Thus, the identification of the Yanagi mushroom using both morphological characteristics and ITS region sequences was an accurate and efficacious method for use in the species identification of this mushroom in Thailand.
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References
จิตรา กิตติโมรากุล ธนภักษ์ อินยอด วิภาวี ชั้นโรจน์ ภรณี สว่างศรี และรัชฎาภรณ์ ทองเหม. 2568. การเก็บรวบรวมและคัดเลือกสายพันธุ์เห็ดยานางิ (Agrocybe cylindracea) เพื่อใช้ในการพัฒนาสายพันธุ์. Journal of Agricultural Research and Communications. 41(1): 11-22.
อัจฉรา พยัพพานนท์. 2536. Agrocybe cylindracea ATCC#90228 เห็ดที่กำเนิดจากกองโรคพืช ฯ. ข่าวสารโรคพืชและจุลชีววิทยา. 3(3): 20.
Callac, P., J. Guinberteau, C. Ferandon and G. Barroso. 2011. An Asian commercial strain of Agrocybe chaxingu and a European wild strain of Agrocybe cylindracea exhibiting morphological difference and high genetic divergence are interfertile. pp. 113-122. In: Proceedings of the 7th International Conference on Mushroom Biology and Mushroom Products. Institut National de Recherche Agronomique (INRA), Arcachon.
Chen, W.M., H.M. Chai, H.M. Zhou, G.T. Tian, S.H. Li and Y.C. Zhao. 2012. Phylogenetic analysis of the Agrocybe aegerita multispecies complex in Southwest China inferred from ITS and mtSSU rDNA sequences and mating tests. Annals of Microbiology. 62(4): 1791-1801.
Frøslev, T.G., T.S. Jeppesen, T. Læssøe and R. Kjøller. 2007. Molecular phylogenetics and delimitation of species in Cortinarius section Calochroi (Basidiomycota, Agaricales) in Europe. Molecular Phylogenetics and Evolution. 44(1): 217-227.
Gawel, N.J. and R.L. Jarret. 1991. A modified CTAB DNA extraction procedure for Musa and Ipomoea. Plant Molecular Biology Reporter. 9(3): 262-266.
Li, J. W. Yang, J. Ren, B. Cao, X. Zhu, L. Lin, W. Ye and R. Zhao. 2023. A new species Agrocybe striatipes, also a newly commercially cultivated mushroom with highly nutritional and healthy values. Journal of Fungi. 9(3): 383.
Liu, Q.M., H.Y. Song, R.X. Chen, M.H. Chen, Z.J. Zhai, J.P. Zhou, Y. Gao and D.M. Hu. 2021. Species concept of Cyclocybe chaxingu, an edible mushroom cultivated in China. Mycosystema. 40(5): 981-991.
Mitchell, J.I. and A. Zuccaro. 2006. Sequences, the environment and fungi. Mycologist 20(2): 62-74.
Niveiro, N., M. Uhart and E. Albertó. 2020. Revision of the genera Agrocybe and Cyclocybe (Strophariaceae, Agaricales, Basidiomycota) in Argentina. Rodriguésia. 71: e02272018.2020.
Tamura, K., G. Stecher and S. Kumar. 2021. MEGA11: Molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution. 38(7): 3022-3027.
Thompson, J.D., D.G. Higgins and T.J. Gibson. 1994. Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research. 22(22): 4673-4680.
Uhart, M. and E. Alberto. 2007. Morphologic characterization of Agrocybe cylindracea (Basidiomycetes, Agaricales) from America, Europe and Asia. Scientia Fungorum.24: 9-18.
Vizzini, A., C. Angelini and E. Ercole. 2014 Le sezioni Velatae e Aporus di Agrocybe sottogenere Aporus: rivalutazione del genere Cyclocybe Velen. ed una nuova specie. Bolletino della Associazione Micologica ed Ecologica Romana. 92(2): 21-38.
Wang, L., Q. Zhou and L. Li. 2022. Analysis of Phylogeny of Agrocybe Genus Based on Nucleotide Database in NCBI. bioRxiv. Available at: https://doi.org/10.1101/2022.07.27.501799. Accessed: October 11, 2025.
White, T.J., T. Bruns, S. Lee and J. Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. pp. 315-322. In: PCR protocols: A guide to methods and applications, M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (eds). Academic, San Dieg.
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