In Silico Predictions of Pharmacokinetic, Toxicity, and Molecular Interactions of Fungal β-1, 3/1, 6-Glucans Oligosaccharides with Immune Cells Receptors
Main Article Content
Abstract
Abstract
β-1, 3/1, 6-glucans are polysaccharides in fungi’s cell walls (yeast, mold, and mushrooms) known to promote an immune response. Recently, gamma irradiation has been used to cut β-glucan polysaccharides into oligosaccharides with improved solubility. However, their pharmacokinetic and toxicity profiles, and molecular interactions with immune cell receptors were unknown. This study aims to use in silico models to predict the absorption, distribution, metabolism, excretion, and toxicity (ADMET) and the interaction of fungal β-1, 3/1, 6-glucans oligosaccharides with neutrophil receptors, including Dectin-1 and TLR2. Molecular docking and analysis were performed by using UCSF Chimera, AutoDock Vina, Proteins.plus, and PyMol. In silico ADMET analysis was done by using the pkCSM web server. The result showed that both 1.6 and 0.9 kDa forms of 1, 3/1, 6 β-glucans oligosaccharides can bind with Dectin-1 and TLR2 better than the reference compounds. Their binding capacity with the whole molecule is better than with the known binding sites. The 1.6 kDa β-glucans bind to the macromolecules of TLR2 better than the 0.9 kDa ones. ADMET analyses suggest low absorption, very low blood–brain barrier permeability, no CYP2D6 metabolism, and no hepatotoxicity or genotoxicity. In conclusion, this study predicts that the fungal β-1, 3/1, 6-glucans oligosaccharides are low-toxic and are fecally excreted without metabolic transformation. Their binding to Dectin-1 and TLR2 receptors on neutrophils is stronger than that of reference compounds and is influenced by molecular weight. These findings suggest that they possess new binding sites to both receptors, warranting further studies.
Article Details
References
Brown GD, Gordon S. Fungal beta-glucans and mammalian immunity. Immunity 2003; 19(3): 311-5.
Qiao Y, Ye X, Zhong L, et al. Yeast β-1,3-glucan production by an outer membrane β-1,6-glucanase: process optimization, structural characterization and immunomodulatory activity. Food Funct 2022; 13(7): 3917-30.
Stier H, Ebbeskotte V, Gruenwald J. Immune-modulatory effects of dietary yeast beta-1,3/1,6-D-glucan. Nutr J 2014; 13: 38.
Tsoni SV, Brown GD. beta-Glucans and dectin-1. Ann N Y Acad Sci 2008; 1143: 45-60.
Xin Y, Ji H, Cho E, et al. Immune-enhancing effect of water-soluble beta-glucan derived from enzymatic hydrolysis of yeast glucan. Biochem Biophys Rep 2022; 30: 101256.
Herre J, Willment JA, Gordon S, et al. The role of Dectin-1 in antifungal immunity. Crit Rev Immunol 2004; 24(3): 193-203.
Taylor PR, Tsoni SV, Willment JA, et al. Dectin-1 is required for beta-glucan recognition and control of fungal infection. Nat Immunol 2007; 8(1): 31-8.
Kalia N, Singh J, Kaur M. The role of dectin-1 in health and disease. Immunobiology 2021; 226(2): 152071.
Brown GD. Dectin-1: a signalling non-TLR pattern-recognition receptor. Nat Rev Immunol 2006; 6(1): 33-43.
Han XQ, Yue GL, Yue RQ, et al. Structure elucidation and immunomodulatory activity of a beta glucan from the fruiting bodies of Ganoderma sinense. PLoS One 2014; 9(7): e100380.
Chan GC, Chan WK, Sze DM. The effects of beta-glucan on human immune and cancer cells. J Hematol Oncol 2009; 2: 25.
Goodridge HS, Wolf AJ, Underhill DM. Beta-glucan recognition by the innate immune system. Immunol Rev 2009; 230(1): 38-50.
Kitchen DB, Decornez H, Furr JR, et al. Docking and scoring in virtual screening for drug discovery: methods and applications. Nat Rev Drug Discov 2004; 3(11): 935-49.
van de Waterbeemd H, Gifford E. ADMET in silico modelling: towards prediction paradise? Nat Rev Drug Discov 2003; 2(3): 192-204.
Meng XY, Zhang HX, Mezei M, et al. Molecular docking: a powerful approach for structure-based drug discovery. Curr Comput Aided Drug Des 2011; 7(2): 146-57.
Brown GD, Gordon S. Immune recognition. A new receptor for beta-glucans. Nature 2001; 413(6851): 36-7.
Brown J, O'Callaghan CA, Marshall AS, et al. Structure of the fungal beta-glucan-binding immune receptor dectin-1: implications for function. Protein Sci 2007; 16(6): 1042-52.
Kang JY, Nan X, Jin MS, et al. Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer. Immunity 2009; 31(6): 873-84.
Patidar A, Mahanty T, Raybarman C, et al. Barley beta-glucan and zymosan induce dectin-1 and toll-like receptor 2 co-localization and anti-leishmanial immune response in Leishmania donovani-infected BALB/c mice. Scand J Immunol 2020; 92(6): e12952.
Tabata K, Ito W, Kojima T, et al. Ultrasonic degradation of schizophyllan, an antitumor polysaccharide produced by Schizophyllum commune fries. Carbohydr Res 1981; 89(1): 121-35.
Mueller A, Raptis J, Rice PJ, et al. The influence of glucan polymer structure and solution conformation on binding to (1→3)-β-d-glucan receptors in a human monocyte-like cell line. Glycobiology 2000; 10(4): 339-46.
Butt SS, Badshah Y, Shabbir M, et al. Molecular docking using chimera and autodock vina software for nonbioinformaticians. JMIR Bioinform Biotechnol 2020; 1(1): e14232.
Coutsias EA, Seok C, Dill KA. Using quaternions to calculate RMSD. J Comput Chem 2004; 25(15): 1849-57.
Pettersen EF, Goddard TD, Huang CC, et al. UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem 2004; 25(13): 1605-12.
Eberhardt J, Santos-Martins D, Tillack AF, et al. AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings. J Chem Inf Model 2021; 61(8): 3891-8.
Trott O, Olson AJ. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J Comput Chem 2010; 31(2): 455-61.
Hollingsworth SA, Dror RO. Molecular dynamics simulation for all. Neuron 2018; 99(6): 1129-43.
Pires DE, Blundell TL, Ascher DB. pkCSM: Predicting Small-Molecule Pharmacokinetic and Toxicity Properties Using Graph-Based Signatures. J Med Chem 2015; 58(9): 4066-72.
Hassell AM, An G, Bledsoe RK, et al. Crystallization of protein-ligand complexes. Acta Crystallogr D Biol Crystallogr. 2007; 63(Pt 1): 72-9.
Camilli G, Tabouret G, Quintin J. The complexity of fungal β-glucan in health and disease: effects on the mononuclear phagocyte system. Front Immunol. 2018; 9.
Adams EL, Rice PJ, Graves B, et al. Differential high-affinity interaction of dectin-1 with natural or synthetic glucans is dependent upon primary structure and is influenced by polymer chain length and side-chain branching. J Pharmacol Exp Ther 2008; 325(1): 115-23.
Chen T, Gao C. Innate immune signal transduction pathways to fungal infection: Components and regulation. Cell Insight 2024; 3(3): 100154.
Hernández-Santos N, Gaffen SL. Th17 cells in immunity to Candida albicans. Cell Host Microbe 2012; 11(5): 425-35.
Ferreira LG, Dos Santos RN, Oliva G, et al. Molecular docking and structure-based drug design strategies. Molecules 2015; 20(7): 13384-421.
Chen R, Zou J, Chen J, et al. Pattern recognition receptors: function, regulation and therapeutic potential. Signal Transduct Target Ther. 2025; 10(1): 216.
Brown GD, Herre J, Williams DL, et al. Dectin-1 mediates the biological effects of β-glucans. J Exp Med 2003; 197(9): 1119-24.
Goodridge HS, Reyes CN, Becker CA, et al. Activation of the innate immune receptor Dectin-1 upon formation of a ‘phagocytic synapse’. Nature 2011; 472(7344): 471-5.
Methacanon P, Weerawatsophon U, Tanjak P, et al. Interleukin-8 stimulating activity of low molecular weight β-glucan depolymerized by γ-irradiation. Carbohydr Polym 2011; 86(2): 574-80.
Lipinski CA, Lombardo F, Dominy BW, et al. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev. 2001; 46 (1): 3-26.
Singh RP, Bhardwaj A. β-glucans: a potential source for maintaining gut microbiota and the immune system. Front Nutr. 2023;10: 1143682.
Batbayar S, Lee DH, Kim HW. Immunomo-dulation of fungal β-glucan in host defense signaling by dectin-1. Biomol Ther (Seoul). 2012; 20 (5): 433-45.
Jung C, Hugot JP, Barreau F. Peyer's patches: the immune sensors of the intestine. Int J Inflam. 2010;2010:823710.
Mabbott NA, Donaldson DS, Ohno H, et al. Microfold (M) cells: important immuno-surveillance posts in the intestinal epithelium. Mucosal Immunol. 2013; 6(4): 666-77.
Muangpracha N, Rungraung N, Prathumpai W, et al. A dose-escalation study to evaluate safety of a novel β-1,3/1,6-glucan from Ophiocordyceps dipterigena BCC 2073 supplementation in healthy volunteers. Thai J Toxicol 2025; 40(1): 1-28.
Morris GM, Huey R, Lindstrom W, et al. AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. J Comput Chem 2009; 30(16): 2785-91.
Agu PC, Afiukwa CA, Orji OU, et al. Molecular docking as a tool for the discovery of molecular targets of nutraceuticals in diseases manage-ment. Sci Rep 2023; 13(1): 13398.
Sahoo R, Pattanaik S, Pattnaik G, et al. Review on the use of molecular docking as the first line tool in drug discovery and development. Indian J Pharm Sci 2022; 84.