Study on Genetic Relationship of <I>Dimocarpus longan</I> Using ID-RAPD Technique
Main Article Content
Abstract
Longan (Dimocarpus longan Lour.) is an economically important crop. There are numerous longan varieties grown in the northern part of Thailand. Currently, molecular techniques are used to study the genetic relationship of longan. In this study, Intron Derived Random Amplified Polymorphic DNA (ID- RAPD) was used to investigate the genetic relationship of 25 varieties of longan which were collected at Maejo University. Fifty amplified DNA fragments were obtained from ten ID-RAPD primers. Forty-five of 50 amplified bands were polymorphism (90%). Genetic similarity and cluster analysis was performed using NTSYSpc program. The genetic similarity index ranged from 0.46-0.98. The dendrogram showed that 25 varieties of longan were classified into 3 groups with a 0.74 similarity index. Moreover, Daw varieties were clearly separated from other varieties.
Article Details
References
สุรินทร์ ปิยะโชคณากุล. 2552. เครื่องหมายดีเอ็นเอ: จากพื้นฐานสู่การประยุกต์, สำนักพิมพ์ มหาวิทยาลัยเกษตรศาสตร์, กรุงเทพฯ, 269 หน้า.
Anuntalabhochai, S., R. Chandet, J. Chiangda and P. Apavatjrut. 2000. Genetic diversity within Lychee (Litchi chinensis Sonn.) based on RAPD analysis. Acta Horticulturae 575: 253-259.
Cutler, R. W., S. Sitthiphrom, J. Marha and S. Anuntalabhochai. 2007. Development of sequence-characterized DNA markers linked to temperature insensitivity for fruit production in Longan (Dimocarpus longan Lour.) cultivars. Journal of Agronomy and Crop Science 193(1): 74-78.
Hwang, S. K. And Y. M. Kim. 2000. A simple and reliable method for preparation of cross-contamination free plant genome DNA for PCR-based detection of transgenes. Journal of biochemistry and molecular biology 33: 537-546.
Pan, D. M., F. L. Zhong, Z. X. Guo, T. F. Pan, K. T. Li and J. B. Wang. 2008. Research on Germplasm Resources and Breeding of Longan (Dimocarpus longan Lour.) in the Past Decade in China. Acta Horticulturae 863: 79-86.
Rohlf, F. J. 2002. NTSYSpc Numerical Taxonomy and Multivariate Analysis System. Applied Biostatistics, Inc., New York. 38 p.
Sitthiphrom, S., S. Anuntalabhochai, N. Dum-Ampai, B. Thakumphu and M. Dasanonda. 2003. Investigation of genetic relationships and hybrid detection in Longan by high annealing temperature RAPD. Acta Horticulturae 665: 161-170.
Wangspa, R., R. W. Cutler, S. Sitthiprom, R. Chundet, N. Dumampai and S. Anuntalabhochai. 2005. DNA fingerprint database of some economically important Thai plants: Litchi chinensis Sonn, Dimocarpus longan Lour, and Peuraria spp. ScienceAsia 31:145-149.
Xiong, F., J. Jiang, Z. Han, R. Zhong, L. He, W. Zhuang and R. Tang. 2011. Molecular characterization of high plant species using PCR with primers designed from consensus branch point signal sequences. Biochemical genetics 49(5-6): 352-363.
Xiong, F., J. Liu, J. Jiang, R. Zhong, L. He, Z. Han, Z. Li, X. Tang and R. Tang. 2013. Molecular profiling of genetic variability in domesticated groundnut (Arachis hypogaea L.) based on ISJ, URP, and DAMD markers. Biochemical genetics 51(11-12): 889-900.
Yonemoto, Y., A. K. Chowdhury, H. Kato, M. M. Macha. 2006. Cultivars identification and their genetic relationships in Dimocarpus longan subspecies based on RAPD markers. Scientia Horticulturae 109:147–152.