Quantification of the Severity of Brown Leaf Spot Disease in Cassava using Image Analysis

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Wanrat Abdullakasim

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Accurate assessment of cassava brown leaf spot (BLS) disease severity is needed in epidemic monitoring and plant breeding. The objectives of this study were to develop an image analysis technique for quantifying infection levels of cassava BLS disease, and to compare the assessment results with conventional visual rating using Teri’s diagram key. Detached cassava leaves infected by BLS disease of contrasting severity were collected
from an experimental field. The leaf images were captured under controlled illumination. The images were preprocessed and read for primary RGB values. An image processing algorithm based on HSI color space has been developed for segmenting lesion region on a leaf using Otsu’s method which allows the counting of number of spots (N) and the calculation of percentage of infection area (PI). Manual scoring has been concurrently carried out by seven human raters using Teri’s illustrated diagram which orders BLS infection into 4 levels, representing lesion area of approximately 5, 10, 15 and 20% respectively. The Teri’s diagram itself was also scanned and presented to the image processing algorithm developed to investigate actual lesion area. Verification of Teri’s
diagram indicated that the Ns obtained from image analysis was 100% coincided with that counted by raters. On the other hand, the PI values obtained from image analysis were 0.87, 3.94, 9.87 and 18.71%, considerably smaller than visual approximation. Assessment of diseased leaf samples by image analysis and visual rating showed a good agreement for Ns (R2=0.8993), however, visual rating tended to overestimate the infection level
comparing with image analysis, and a large variation among raters could be observed. The results further suggested that the accuracy of spots detection vary proportionally with the infection level. This study has demonstrated the usefulness of image analysis in quantifying cassava BLS disease severity in that it provides more elaborate scaling and better consistency. 

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Electronics and information technology

References

Bock, C.H., Parker, P.E., Cook, A.Z., Gottwald, T.R. 2008. Visual rating and the use of image analysis for assessing different symptoms of citrus canker on grapefruit leaves. Plant Disease 92, 530–541.

Bock, C.H., Cook, A.Z., Parker, P.E., Gottwald, T.R. 2009. Automated image analysis of the severity of foliar citrus canker symptoms. Plant disease 93, 660–665.

Center for Agricultural Information OAE, 2013. Thailand Foreign Agricultural Trade Statistics 2012. Office of Agricultural Economics, Ministry of Agriculture and Cooperatives, Bangkok, Thailand.

Godoy, C.V., Carneiro, S.M.T.P.G., Iamauti, M.T., Pria, M.D., Amorim, L., Berger, R.D., Bergamin Filho, A. 1997. Diagrammatic scales for bean diseases: development and validation. Journal of Plant Diseases and Protection 104, 336–345.

Gonzalez, R.C., Woods, R.E. 2010. Digital Image Processing. Pearson, USA. Hillocks, R.J., Wydra, K. 2002. Bacterial, fungal and nematode disease. In: Hillocks, R.J., Thresh, J.M., Bellotti, A.C. (Eds), Cassava: Biology, Production and Utilization. CAB International, UK.

James, W.C. 1971. An Illustrated series of assessment keys for plant diseases: their preparation and usage. Canadian Plant Diseases Survey 51, 39–65.

Kampanich, W. 2003. Investigation on Screening Methods for Cassava Resistant Varieties to Brown Leaf Spot Disease (Cercospora henningsii Allescher). Master’s dissertation, Kasetsart University, Thailand

(in Thai).

McAndrew, A. 2004. Introduction of Digital Image Processing with MATLAB. Thomson, USA.

Michereff, S.J., Noronha, M. A., Lima, G. SA., Albert, I.CL., Melo, E.A., and Gusmao, L.O. 2009. Diagrammatic scale to assess downy mildew

severity in melon. Horticultura Brasileira 27, 76–79.

Office of Agricultural Economics, 2013. Agricultural Statistics of Thailand 2012. Ministry of Agriculture and Cooperatives, Bangkok, Thailand.

Onyeka, T.J., Dixon, A.G.O., Bandyopadhy, R., Okechukwu, R.U., Bamkefa, B. 2004. Distribution and current status of bacterial blight and fungal diseases of cassava in Nigeria. International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria.

Poland, J.A., Nelson, R. 2011. In the eye of the beholder: The effect of rater variability and different rating scales on QTL mapping. Phytopathology 101, 290–298.

Teri, J.M., Thurston, H.D., Lozano, J.C. 1978. The Cercospora leaf diseases of cassava. Proceedings Cassava Protection Workshop, CIAT, Cali, Colombia 7–12 November 1977, 101–116.

Teri, J.M., Thurston, H.D., Lozano, J.C. 1980. Effect of brown leaf spot and Cercospora leaf blight on cassava production. Tropical Agriculture 57, 239–243.

Wijekoon, C.P., Goodwin, P.H., Hsiang, T. 2008. Quantifying fungal infection of plant leaves by digital image analysis using Scion Image software. Journal of Microbiological Methods 74, 94–101.

Wydra, K., Verdier, V. 2002. Occurrence of cassava diseases in relation to environmental, agronomic and plant characteristics. Agriculture Ecosystems and Environmental 93, 211–226.

Yang, C.-M. 2010. Assessment of the severity of bacterial leaf blight in rice using canopy hyperspectral reflectance. Precision Agriculture

(1), 61–81.