Donor parental determination for breeding the RD41 rice cultivar to improve bacterial blight resistance
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ต.ค. 23, 2020
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Bacterial blight (BB) caused by Xanthomonas oryzae pv. Oryzae (Xoo) is one of the most critical rice diseases in Southeast Asia. RD41 is one of the most popular rice varieties in Thailand’s irrigation areas due to its early maturity and high productivity. However, it is highly susceptible to BB. To improve RD41’s BB resistance, an experimental breeding program was conducted, in which ten rice varieties, five Thai recommended, three newly introduced varieties and two susceptible check were evaluated in order to identify a parental variety. Three Xoo isolates collected from Thailand’s Northeast region were selected for artificial inoculation. Lesion length was observed at five days after inoculation (DAI). IR62266, one of the newly introduced varieties, was resistant to all Xoo isolates, and was greatest in broad-spectrum resistance (BSR); whereas the Thai varieties SPR1, SPR60, and SPR90 were susceptible with 0.00 BSR. KDML105, the susceptibility check variety demonstrated a high percentage severity (85%), whereas IR62266 was 35.5% at 9 DAI. Likewise, the areas under the disease development progress curve (AUDPC) was low for most of the proposed varieties. To confirm resistance, the F2 population from a cross of RD41 X IR62266 illustrated a ratio of single dominant resistance. IR62266 has proven to have a high potential as a donor parent for breeding programs in which to achieve successful BB resistance.
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References
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Mew, T.W., C.M. Vera Cruz, and E.S. Medalla. 1992 Changes in race frequency of Xanthomonas oryzae pv. oryzae in response to the planting of rice cultivars in the Philippines. Plant Dis. 76:1029–1032.
Niño-Liu, D.O., L. Darnielle, and A.J. Bogdanove. 2006. Xanthomonas oryzae pathovars: model pathogens of a model crop. Mol. Plant Pathol. 7: 303-324.
Noh, T. H., D. K. Lee, J. C. Park, H. K. Shim., M. Y. Choi, and M. H. Kang. 2007. Effect of bacterial leaf blight occurrence on rice yield and grain quality in different rice growth stage. Res. Plant Dis. 13: 20–23.
Office of Agricultural Economics. 2016. Rice production. http://www.oae.go.th/. Accessed Sep. 14, 2019.
Ou, S.H. 1985. Rice Diseases. 2nd ed. Commonwealth. Mycological Institute. Kew, Surrey, England.
Pattawatang, P. 2005. Mapping of quantitative trait loci controlling bacterial blight resistance in rice. M.S. Thesis, Kasetsart University. Thailand.
Prasad, R., S. S. Yasbir, and K. Dinesh. 2017. Current status, Challenges, and Opportunities in Rice Production. Rice production Worldwide.
Pradhan, S.K, N.K. Deepak, M. Sounya, B. Lambodar, B.R. Saumya, P. Elssa, L. Srikanta, and A. Annamalai. 2015. Pyramiding of three bacterial blight resistance genes for broad-spectrum resistance in deepwater rice variety, Jalmagna. Rice. 8: 19
Rao, K.K., M. Lakshminarasu, and K.K. Jena. 2002. DNA markers and marker-assisted breeding for durable resistance to bacterial blight disease in rice. Biotechnol Adv. 20: 33–47.
Rice Thailand. 2016. Rice Knowledge Bank. http://www.brrd.in.th/rkb/varieties. Accessed Aug. 11, 2019.
Ronald, P.C. 1997. The molecular basis of disease resistance in rice. Plant Mol. Biol. 35: 179-186.
Saengchai, S. 2009. Identification and geographical distribution of bacterial leaf blight isolates (Xanthomonas oryzae pv. Oryzae) and Tagging resistance gene in a landrace rice cv. Chiang Rung (Oryza sativa L.). M.S. Thesis, Kasetsart University. Thailand.
Sombunjitt, S., S. Tanee, K. Chatuporn, and H. Vipa. 2017. Searching for and analysis of bacterial blight resistance genes from Thailand rice germplasm. ANRES. 65: 365-375.
Supakin, S. 2007. DNA fingerprint for pathotype screening of Xanthomonas oryzae pv. Oryzae causing bacterial leaf blight of rice. M.S. Thesis, Chulalongkorn University. Thailand.
Thomas, F. and A. Dobermann. 2002. Rice in the Global Food Supply. Better crops international.
Tuyet, L. C. and D.C. Patrick. 2018. Sustainable Development of Rice and Water Resources in Mainland Southeast Asia and Mekong River Basin.
Verdier, V., C.V. Cruz, and J.E. Leach. 2012. Controlling rice bacterial blight in Africa: needs and prospects. J. Biotechnol. 159: 320–328.
Win, M.K. 2013. Identification of Non-Aged-Related Broad Spectrum Resistance and Marker Assisted Introgression of Multiple Genes for the Improvement of Bacterial leaf blight. M.S. Thesis, Kasetsart University. Thailand.
Zhang, F., D.L. Zhuo, F. Zhang, L.Y. Huang, W.S. Wang, J.L. Xu, C. Vera Cruz, Z. Li, and Y.L. Zhou. 2015. Xa39, a novel dominant gene conferring broad-spectrum resistance to Xanthomonas oryzae pv. oryzae in rice. Plant Pathol. 64: 568–575.
Ahn, S.W. 1994. International collaboration on breeding for resistance to rice blast.
Bhasin, H., D. Bhatia, S. Raghuvanshi, J.S. Lore, G.K. Sahi, B. Kaur, Y. Vikal and K. Singh. 2012. New PCR-based sequence-tagged site marker for bacterial blight resistance gene Xa38 of rice. Mol. Breed. 30: 607–611.
Blair, M.W, and S.R. McCouch. 1997. Microsatellite and sequence-tagged site markers diagnostic for the rice bacterial blight resistance gene xa-5. Theor. Appl. Genet. 95: 174-184.
Boonchuay, D., B. Anakkpon and V. Duangporn. 2014. Relationship of rice disease epicemics and climate change in irrigated area of Chai Nat and Nakhonsawan Province. P.135-158. Seminar of rice research center groups on upper and lower northern region, Chai Nat (Thailand).
Chen, S., C.G. Xu, X.H. Lin, and Q. Zhang. 2001. Improving bacterial blight resistance of ‘6087’, an elite restorer line of hybrid rice, by molecular marker assisted selection. Plant Breed. 120: 133-137.
Chen, S., X. Liu, L. Zeng, D. Ouyang, J. Yang, and X. Zhu. 2011. Genetic analysis and molecular mapping of a novel recessive gene xa34(t) for resistance against Xanthomonas oryzae pv. oryzae. Theor. Appl. Genet. 122: 1331-1338.
Gomez, K.A, and A.A. Gomez. 1984. Statistical procedures for agricultural research. 2nd ed. John Wiley and Sons, New York.
Hutin, M., F. Sabot, A. Ghesquiere, R. Koebnik, and B. Szurek. 2015. A knowledge-based molecular screen uncovers a broad-spectrum OsSWEET14 resistance allele to bacterial blight from wild rice. Plant j. 84: 694-703.
International Rice Research Institute (IRRI). 2002. Standard Evaluation System for Rice. International Rice Research Institute. Los Banos, Philippine.
International Rice Research Institute (IRRI). 2013. Standard evaluation system for rice. 5th ed. International Rice Research Institute, P.O. Box 933, Manila, The Philippines.
Iyer-Pascuzzi, A.S., H. Jiang, L. Huang, and S.R. McCouch. 2008. Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5. Phytopathol. 98: 289-295.
Kauffman. H.E., A.P.D. Reddy, S.P.V. Ksiek, and S.D. Marca. 1973. An improved technique for evaluating resistance of race varieties to Xanthomonas oryzae. Plant Dis Rep. 57: 537-541.
Khush, G.S., E, Bacalango, and T. Ogauwa. 1990. A new gene for resistance to bacterial from O. longistaminata. Rice Genet. Newsl. 7: 121–122.
Khush, G.S, D.J. MacKill, and G.S. Sidhu. 1989. Breeding rice for resistance to bacterial blight. In Baterial blight of rice, Proc. Int. Worshop Bacterial Blight Rice. IRRI. Manila, The Philippines.
Kim, S.M., J.P. Suh, Y. Qin, T.H. Noh, R.F. Reinke, and K.K. Jena. 2015. Identification and fine-mapping of a new resistance gene, Xa40, conferring resistance to bacterial blight races in rice (Oryza sativa L.) Theor. Appl. Genet. 128: 1933–1943.
Limpinuntana, V., A. Patanothai, T. Charoenwatana, G. Conway, M. Seetisarn, and K. Rerkasem. 1982. An Agroecosystem Analysis of Northeast Thailand. Khon Kaen, Thailand: KKU-Ford Cropping Systems Project, Khon Kaen University.
Liu, Q., M. Yuan., Y. Zhou., X. Li., J. Xiao, and S. Wang. 2011. A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice. Plant Cell Environ. 34: 1958–1969.
Madden, L.V., G. Hughes, and V.D. Bosch. 2007. The Study of Plant Disease Epidemics. American Phytopathology Society, St. Paul., Minnesota, USA.
Mazzola, M., J.E. Leach, R. Nelson, and F.F. White. 1994. Analysis of the interaction between Xanthomonas oryzae pv. oryzae and the rice cultivars IR24 and IRBB21. Phytopathol. 84: 392-397.
Mew, T.W. 1987. Current status and future prospects of research on bacterial blight of rice. Phytopathol. 25: 359–382.
Mew, T.W., C.M. Vera Cruz, and E.S. Medalla. 1992 Changes in race frequency of Xanthomonas oryzae pv. oryzae in response to the planting of rice cultivars in the Philippines. Plant Dis. 76:1029–1032.
Niño-Liu, D.O., L. Darnielle, and A.J. Bogdanove. 2006. Xanthomonas oryzae pathovars: model pathogens of a model crop. Mol. Plant Pathol. 7: 303-324.
Noh, T. H., D. K. Lee, J. C. Park, H. K. Shim., M. Y. Choi, and M. H. Kang. 2007. Effect of bacterial leaf blight occurrence on rice yield and grain quality in different rice growth stage. Res. Plant Dis. 13: 20–23.
Office of Agricultural Economics. 2016. Rice production. http://www.oae.go.th/. Accessed Sep. 14, 2019.
Ou, S.H. 1985. Rice Diseases. 2nd ed. Commonwealth. Mycological Institute. Kew, Surrey, England.
Pattawatang, P. 2005. Mapping of quantitative trait loci controlling bacterial blight resistance in rice. M.S. Thesis, Kasetsart University. Thailand.
Prasad, R., S. S. Yasbir, and K. Dinesh. 2017. Current status, Challenges, and Opportunities in Rice Production. Rice production Worldwide.
Pradhan, S.K, N.K. Deepak, M. Sounya, B. Lambodar, B.R. Saumya, P. Elssa, L. Srikanta, and A. Annamalai. 2015. Pyramiding of three bacterial blight resistance genes for broad-spectrum resistance in deepwater rice variety, Jalmagna. Rice. 8: 19
Rao, K.K., M. Lakshminarasu, and K.K. Jena. 2002. DNA markers and marker-assisted breeding for durable resistance to bacterial blight disease in rice. Biotechnol Adv. 20: 33–47.
Rice Thailand. 2016. Rice Knowledge Bank. http://www.brrd.in.th/rkb/varieties. Accessed Aug. 11, 2019.
Ronald, P.C. 1997. The molecular basis of disease resistance in rice. Plant Mol. Biol. 35: 179-186.
Saengchai, S. 2009. Identification and geographical distribution of bacterial leaf blight isolates (Xanthomonas oryzae pv. Oryzae) and Tagging resistance gene in a landrace rice cv. Chiang Rung (Oryza sativa L.). M.S. Thesis, Kasetsart University. Thailand.
Sombunjitt, S., S. Tanee, K. Chatuporn, and H. Vipa. 2017. Searching for and analysis of bacterial blight resistance genes from Thailand rice germplasm. ANRES. 65: 365-375.
Supakin, S. 2007. DNA fingerprint for pathotype screening of Xanthomonas oryzae pv. Oryzae causing bacterial leaf blight of rice. M.S. Thesis, Chulalongkorn University. Thailand.
Thomas, F. and A. Dobermann. 2002. Rice in the Global Food Supply. Better crops international.
Tuyet, L. C. and D.C. Patrick. 2018. Sustainable Development of Rice and Water Resources in Mainland Southeast Asia and Mekong River Basin.
Verdier, V., C.V. Cruz, and J.E. Leach. 2012. Controlling rice bacterial blight in Africa: needs and prospects. J. Biotechnol. 159: 320–328.
Win, M.K. 2013. Identification of Non-Aged-Related Broad Spectrum Resistance and Marker Assisted Introgression of Multiple Genes for the Improvement of Bacterial leaf blight. M.S. Thesis, Kasetsart University. Thailand.
Zhang, F., D.L. Zhuo, F. Zhang, L.Y. Huang, W.S. Wang, J.L. Xu, C. Vera Cruz, Z. Li, and Y.L. Zhou. 2015. Xa39, a novel dominant gene conferring broad-spectrum resistance to Xanthomonas oryzae pv. oryzae in rice. Plant Pathol. 64: 568–575.